Degraded-protein search strategy benchmark
benchmark
Degraded-protein search strategy benchmark: benchmark. Benchmarks search strategies for ancient and degraded proteins on a controlled beta-lactoglobulin series, comparing database engines against de novo sequencing through…
Benchmarks search strategies for ancient and degraded proteins on a controlled beta-lactoglobulin series, comparing database engines against de novo sequencing through DeNovoGUI (PepNovo+, DirecTag, Novor) to see which recovers coverage as degradation increases.
| Kind | benchmark |
| Acquisition | DDA |
Papers describing it (2)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2023, bioRxiv, preprint)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2024, Peer Community Journal, peer-reviewed)