Degraded-protein search strategy benchmark
benchmark
Degraded-protein search strategy benchmark: benchmark. Benchmarks search strategies for ancient and degraded proteins on a controlled beta-lactoglobulin series, comparing database engines against de novo sequencing through…
Benchmarks search strategies for ancient and degraded proteins on a controlled beta-lactoglobulin series, comparing database engines against de novo sequencing through DeNovoGUI (PepNovo+, DirecTag, Novor) to see which recovers coverage as degradation increases.
| Kind | benchmark |
| Acquisition | DDA |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Deposited
- LC-MS/MS and PSM data from “Benchmarking the identification of a single degraded protein to explore optimal search strat (as deposited) · 2023 preprint
- LC-MS/MS, PSM and BLG properties data from “Benchmarking the identification of a single degraded protein to explore opti (as deposited) · 2024 peer-reviewed
Papers describing it (2)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2023, bioRxiv, preprint)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2024, Peer Community Journal, peer-reviewed)