Denovo-GCN

algorithm · GNN

Denovo-GCN: algorithm · GNN. GCN on spectrum graph

GCN on spectrum graph

Kind	algorithm
Deep learning	yes
Acquisition	DDA
Family	GNN

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Trained on

• Nine-species benchmark (version not stated)

Evaluated on

• Nine-species benchmark (version not stated)

Benchmarks

• denovo_benchmarks: median peptide-level average precision 0.559 over 86 datasets, median rank 12 of 15 (version bm-1.0.0).

Both are mass-based matches on the tool’s most recent run. What these numbers mean.

Paper describing it

• Denovo-GCN: De Novo Peptide Sequencing by Graph Convolutional Neural Networks (2023, Applied Sciences (MDPI), peer-reviewed)

Authors (4)

Ruitao Wu, Xiang Zhang (Shandong), Runtao Wang, Haipeng Wang

Seen in the charts

• The architectures
• Models and the authors behind them

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