DLDN-Bench

benchmark

DLDN-Bench: benchmark. Benchmark framework for deep-learning de novo peptide sequencing in proteomics. Derives evaluation datasets from human muscle biopsy MS data on PRIDE annotated by…

Benchmark framework for deep-learning de novo peptide sequencing in proteomics. Derives evaluation datasets from human muscle biopsy MS data on PRIDE annotated by cross-engine consensus, and reports precision / coverage of recent DL tools (and classical baselines) against that pseudo-ground-truth.

Kind	benchmark
Acquisition	DDA

Code

• https://github.com/ddz-icb/DLDN-Bench

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Papers

• DLDN-Bench: A Benchmark Framework for Deep Learning de Novo Peptide Sequencing in Proteomics (2026, bioRxiv, preprint)

Authors (6)

Jannik Schneider, Sonja Hartwig, Alexandra Chadt, Stefan Lehr, Hadi Al-Hasani, Michael Turewicz

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