NovoRank
post-processor · CNN + RNN
NovoRank: post-processor · CNN + RNN. Spectral clustering refinement
Spectral clustering refinement
| Kind | post-processor |
| Deep learning | yes |
| Acquisition | DDA |
| Family | CNN + RNN |
Code
Live stars, open issues and last-push figures are on the Code activity chart.
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Trained on
- ProteomeTools (Parts I-III) · 2022 thesis, 2025 peer-reviewed
Evaluated on
- 11 human cell lines - Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expressi (as deposited) · 2025 peer-reviewed
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified pe (as deposited) · 2025 peer-reviewed
- Data for ‘NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning’ (as deposited) · 2025 peer-reviewed
- Proteogenomics of colorectal cancer liver metastases (as deposited) · 2025 peer-reviewed
- ProteomeTools (Parts I-III) · 2022 thesis, 2025 peer-reviewed
Deposited
Papers describing it (2)
- NovoRank: Machine Learning Based Post-processing for Performance Improvement in De Novo Peptide Sequencing (2022, thesis)
- NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning (2025, Journal of Proteome Research, peer-reviewed)