π-xNovo

algorithm · Transformer (AR)

π-xNovo: algorithm · Transformer (AR). Explainable AI sequencing

Explainable AI sequencing

Kind	algorithm
Deep learning	yes
Acquisition	DDA
Family	Transformer (AR)

Code

• https://github.com/PHOENIXcenter/pi-xNovo

Not on the Code activity chart: the GitHub API has returned no figures for this repository, either because it was added after the last daily refresh or because it is private, renamed or deleted.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Trained on

• Deep Human Proteome Sequencing Enables Global Detection of Mutations and Alternative Splicing (as deposited)
• GraphNovo dataset and checkpoint (as deposited)
• MassIVE-KB (v1)
• Nine-species benchmark (version not stated)

Evaluated on

• Deep Human Proteome Sequencing Enables Global Detection of Mutations and Alternative Splicing (as deposited)
• GraphNovo dataset and checkpoint (as deposited)
• Nine-species benchmark (version not stated)

Paper describing it

• Transforming de novo peptide sequencing by explainable AI (2024, Research Square, preprint)

Authors (7)

Yu Wang, Zhendong Liang, Tianze Ling, Cheng Chang, Tingpeng Yang, Linhai Xie, Yonghong He

Seen in the charts

• The architectures
• Models and the authors behind them

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