pXg

downstream-application

pXg: downstream-application. MHC-I noncanonical peptides

MHC-I noncanonical peptides

Kind	downstream-application
Deep learning	no
Acquisition	DDA
Application area	Immunopeptidomics / neoantigen

Code

• https://github.com/progistar/pXg

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Deposited

• pXg: Comprehensive identification of noncanonical MHC-I-associated peptides from de novo peptide sequencing using RNA-Se (as deposited) · 2024 peer-reviewed

Also used, purpose not recorded

• Global proteogenomic analysis of human MHC I peptides derived from non­canonical reading frames (as deposited) · 2024 peer-reviewed
• Immunopeptidome of an acute myeloid leukemia cell line THP1 (as deposited) · 2024 peer-reviewed
• LC-MSMS of 3 DLBCL cell lines (class I immunopeptidome and whole proteome) (as deposited) · 2024 peer-reviewed

Papers describing it (2)

• pXg: Comprehensive Identification of Noncanonical MHC-I-Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads (2024, Molecular & Cellular Proteomics, peer-reviewed)
• pXg: Comprehensive and Reliable Identification of MHC-I Antigens Using De Novo Peptide Sequencing and Immunotranscriptomic Datasets (2026, Methods in Molecular Biology, peer-reviewed)

Authors (3)

Seunghyuk Choi, Eunok Paek, Shanji Zhang

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