RNovA

algorithm · Transformer (AR)

RNovA: algorithm · Transformer (AR). Zero-shot open PTM discovery

Zero-shot open PTM discovery

Kind	algorithm
Deep learning	yes
Acquisition	DDA
Family	Transformer (AR)

Code

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Benchmarks

denovo_benchmarks: median peptide-level average precision 0.825 over 86 datasets, median rank 4 of 15 (version 1.0.0).

Both are mass-based matches on the tool’s most recent run. What these numbers mean.

Papers describing it (2)

Zero-Shot De Novo Peptide Sequencing with Open Post-Translational Modification Discovery (2025, Research Square, preprint)
Zero-shot de novo peptide sequencing with open posttranslational modification discovery (2026, Nature Biotechnology, peer-reviewed)

Authors (11)

Zeping Mao, Chao Peng, Yuling Chen, Ping Wu, Qianqiu Zhang, Lei Xin, Haiteng Deng, Ming Li, Yonghan Yu, Ruixue Zhang, Baozhen Shan

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Code

Data

Trained on

Evaluated on

Deposited

Benchmarks

Papers describing it (2)

Authors (11)

Seen in the charts