A systematic evaluation of common yeast whole cell lysate proteomics sample preparation protocols
deposit · 2 versions · 1 paper
A systematic evaluation of common yeast whole cell lysate proteomics sample preparation protocols, a deposit in the de novo peptide sequencing catalog.
| Kind | deposit |
| Organisms | Saccharomyces cerevisiae (baker’s yeast) |
| Home | https://www.ebi.ac.uk/pride/archive/projects/PXD026806 |
Versions
as deposited
released 2021-06-18
Where it lives:
- PRIDE · PXD026806
single label-free run (dIon)
One run, MDR27022021_S01_2_DDA01.raw: 39,460 MS2 spectra with no peptide labels. dIon scores de novo predictions by their occurrence in the yeast proteome (UniProt UP000002311), not by peptide accuracy.
spectra 39,460 · released 2026-10-09 · introduced by dIon: Fragmentation-Based Invariance for Self-Supervised Learning of Tandem Mass Spectra
Where it lives:
- Hugging Face · alfred-n/dIon-datasets#de_novo/yeast_label_free de_novo/yeast_label_free
Deposited by (1)
- dIon: Fragmentation-Based Invariance for Self-Supervised Learning of Tandem Mass Spectra (2026) preprint single label-free run (dIon)
Methods on these papers (1)
- dIon algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.