Adaptive GA for tandem-MS peptide sequencing
algorithm · Heuristic
Adaptive GA for tandem-MS peptide sequencing: algorithm · Heuristic. Adaptive genetic algorithm for protein sequencing from tandem MS. Represents peptides as GA individuals, evolves them against the observed spectrum; the adaptive…
Adaptive genetic algorithm for protein sequencing from tandem MS. Represents peptides as GA individuals, evolves them against the observed spectrum; the adaptive component tunes mutation / crossover rates on the fly.
| Kind | algorithm |
| Deep learning | no |
| Acquisition | DDA |
| Family | Heuristic |
Papers describing it (4)
- A preliminary work on evolutionary identification of protein variants and new proteins on grids (2006, 20th International Conference on Advanced Information Networking and Applications - Volume 1 (AINA’06), peer-reviewed)
- Protein Sequencing with an Adaptive Genetic Algorithm from Tandem Mass Spectrometry (2008, arXiv, preprint)
- A Preliminary Work on Evolutionary Identification of Protein Variants and New Proteins on Grids (2008, arXiv, postprint)
- Metaheuristics based de novo protein sequencing: A new approach (2011, Applied Soft Computing, peer-reviewed)