De novo database suitability assessment
downstream-application
De novo database suitability assessment: downstream-application. Uses automated de novo sequencing to test whether a set of spectra holds peptide spectra at all and whether a protein database suits it, for unsequenced species…
Uses automated de novo sequencing to test whether a set of spectra holds peptide spectra at all and whether a protein database suits it, for unsequenced species, metaproteomes and extinct organisms.
| Kind | downstream-application |
| Deep learning | no |
| Acquisition | DDA |
| Application area | General proteomics |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Also used, purpose not recorded
Paper describing it
- Assessing Protein Sequence Database Suitability Using De Novo Sequencing (2020, Molecular & Cellular Proteomics, peer-reviewed)