De novo peptide sequencing (Proteome Informatics chapter)
review
De novo peptide sequencing (Proteome Informatics chapter): review. Book chapter reviewing the de novo peptide sequencing field: its history, manual interpretation, the algorithmic approaches, scoring functions, the available software…
Book chapter reviewing the de novo peptide sequencing field: its history, manual interpretation, the algorithmic approaches, scoring functions, the available software and its applications. Written by the author of PEAKS.
| Kind | review |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Also used, purpose not recorded
- High-throughput MS-based immunopeptidomics (as deposited)
- High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan Africa (as deposited)
- InstaNovo enables diffusion-powered de novo peptide identification in large scale proteomics experiments (as deposited)
- Nine-species benchmark (InstaNovo split)
- Nine-species benchmark (original (DeepNovo, 2017))
- ProteomeTools (Parts I-III)
- ProteomeTools (high-confidence (InstaNovo))
- Supplementary Data for “Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly” (as deposited)
- Winnow MS datasets (version not stated)
Paper describing it
- De novo Peptide Sequencing (2016, Proteome Informatics, peer-reviewed)