Bin Ma

10 papers in the catalog · Canada

Bin Ma: 10 papers in the catalog · Canada · Rapid Novor Inc., University of Waterloo · Works on ADEPTS, De novo sequencing and homology searching, Living proteomics benchmark

Affiliations

Rapid Novor Inc.
University of Waterloo · David R. Cheriton School of Computer Science
University of Waterloo · School of Computer Science
University of Western Ontario · Department of Computer Science

Elsewhere

ORCID 0000-0001-6254-4087

Papers

A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
De novo protein sequencing of antibodies for identification of neutralizing antibodies in human plasma post SARS-CoV-2 vaccination (2024, Nature Communications)
PaSER Novor: Real-time de novo sequencing for 4D-Proteomics applications (2023)
Novor: Real-Time Peptide de Novo Sequencing Software (2015, Journal of the American Society for Mass Spectrometry)
PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification (2012, Molecular & Cellular Proteomics)
De Novo Sequencing and Homology Searching (2012, Molecular & Cellular Proteomics)
ADEPTS: Advanced peptide de novo sequencing with a pair of tandem mass spectra (2010, Journal of Bioinformatics and Computational Biology)
SPIDER: software for protein identification from sequence tags with de novo sequencing error (2005, Journal of Bioinformatics and Computational Biology)
An effective algorithm for peptide de novo sequencing from MS/MS spectra (2005, Journal of Computer and System Sciences)
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003, Rapid Communications in Mass Spectrometry)

Methods and tools

ADEPTS, De novo sequencing and homology searching, Living proteomics benchmark, Novor, PEAKS, PEAKS DB, PaSER Novor, Polyclonal IgG neutralizing antibody discovery, SPIDER

Co-authors (83)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Kaizhong Zhang strength 1.17, 3 shared
Lin He strength 1.00, 1 shared
Richard S. Johnson strength 1.00, 1 shared
Chengzhi Liang strength 0.67, 2 shared
Yonghua Han strength 0.50, 1 shared
Gilles Lajoie strength 0.28, 2 shared
Mingjie Xie strength 0.25, 2 shared
Qixin Liu strength 0.24, 3 shared
Ming Li strength 0.19, 2 shared
Amanda Doherty-Kirby strength 0.17, 1 shared
Christopher Hendrie strength 0.17, 1 shared
Dennis Trede strength 0.14, 1 shared
George Rosenberger strength 0.14, 1 shared
Jonathan Krieger strength 0.14, 1 shared
Rui Zhang strength 0.14, 1 shared
Tharan Srikumar strength 0.14, 1 shared
Baozhen Shan strength 0.13, 2 shared
Lei Xin strength 0.13, 2 shared
Denis Yuen strength 0.11, 1 shared
Jing Zhang strength 0.11, 1 shared
Weiming Zhang strength 0.11, 1 shared
Weiwu Chen strength 0.11, 1 shared
Zefeng Zhang strength 0.11, 1 shared
Amber L. Couzens strength 0.08, 1 shared
Chelsea Reitzel strength 0.08, 1 shared
Emma Beadle strength 0.08, 1 shared
Jin Duan strength 0.08, 1 shared
Lin Wu strength 0.08, 1 shared
Marko Jovic strength 0.08, 1 shared
Minyoung Park strength 0.08, 1 shared
Rosalin M. Dubois strength 0.08, 1 shared
Teresa Nunez de Villavicencio Diaz strength 0.08, 1 shared
Thierry Le Bihan strength 0.08, 1 shared
Victoria Lange strength 0.08, 1 shared
Xiaobing Han strength 0.08, 1 shared
Alfred Nilsson strength 0.02, 1 shared
Benjamin A. Neely strength 0.02, 1 shared
Ceder Dens strength 0.02, 1 shared
Charlotte Adams strength 0.02, 1 shared
Cheng Chang strength 0.02, 1 shared

Seen in the charts

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