DeepNovoAA

downstream-application · CNN + RNN

DeepNovoAA: downstream-application · CNN + RNN. Immunopeptidome neoantigen discovery

Immunopeptidome neoantigen discovery

Kind	downstream-application
Deep learning	yes
Acquisition	DDA
Family	CNN + RNN
Application area	Immunopeptidomics / neoantigen

Code

• https://github.com/nh2tran/DeepNovoAA

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Patents (1)

• US20200243164A1 Systems and methods for patient-specific identification of neoantigens by de novo peptide sequencing for personalized immunotherapy ↗ (Bioinformatics Solutions Inc., priority 2019-01-30, abandoned)

Patent families that claim this method, matched by hand. A patent’s status is Google Patents’ reading of its legal events.

Papers describing it (2)

• Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines (2019, bioRxiv, preprint)
• Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines (2020, Nature Machine Intelligence, peer-reviewed)

Authors (6)

Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen (Waterloo), Baozhen Shan, Ming Li

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