Xin Chen (Waterloo)

5 papers in the catalog · Canada

Xin Chen (Waterloo): 5 papers in the catalog · Canada · Bioinformatics Solutions Inc. · Works on DeepNovo-DIA, DeepNovoAA, PEAKS

Affiliations

• Bioinformatics Solutions Inc.

Elsewhere

ORCID 0000-0002-5189-5647 · OpenAlex

Papers

• A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics (2022, Nature Communications)
• Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices (2021, Nature Machine Intelligence)
• Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines (2020, Nature Machine Intelligence)
• Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines (2019, bioRxiv)
• Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry (2018, Nature Methods)

Methods and tools

DeepNovo-DIA, DeepNovoAA, PEAKS, PointNovo

Patents (3)

• US11694769B2 Systems and methods for de novo peptide sequencing from data-independent acquisition using deep learning ↗ (Bioinformatics Solutions Inc., priority 2017-07-17, active)
• US20200243164A1 Systems and methods for patient-specific identification of neoantigens by de novo peptide sequencing for personalized immunotherapy ↗ (Bioinformatics Solutions Inc., priority 2019-01-30, abandoned)
• US11644470B2 Systems and methods for de novo peptide sequencing using deep learning and spectrum pairs ↗ (Bioinformatics Solutions Inc., priority 2019-04-15, active)

Patent families naming this author as an inventor. The link is made only where the same person is evident: they wrote a paper describing the patented method, or worked at the assignee.

Co-authors (13)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Baozhen Shan strength 0.79, 5 shared
• Lei Xin strength 0.79, 5 shared
• Ming Li strength 0.79, 5 shared
• Ngoc Hieu Tran strength 0.79, 5 shared
• Rui Qiao strength 0.79, 5 shared
• Ali Ghodsi strength 0.29, 2 shared
• Chuyi Liu strength 0.12, 1 shared
• Xianglilan Zhang strength 0.12, 1 shared
• Brenton Morse strength 0.10, 1 shared
• Haibo Bian strength 0.10, 1 shared
• Sahar Rabinoviz strength 0.10, 1 shared
• Shengying Pan strength 0.10, 1 shared
• Xianliang He strength 0.10, 1 shared

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