DiffNovo-DIA

algorithm · Diffusion

DiffNovo-DIA: algorithm · Diffusion. Transformer-diffusion model for DIA de novo peptide sequencing: DIA-side companion to DiffNovo. From Shiva Ebrahimi’s PhD thesis (UNT, 2025); a PyPI package exists…

Transformer-diffusion model for DIA de novo peptide sequencing: DIA-side companion to DiffNovo. From Shiva Ebrahimi’s PhD thesis (UNT, 2025); a PyPI package exists (diffnovo-dia v0.1.2) but the GitHub repo is currently empty and no standalone paper has been published.

Kind	algorithm
Family	Diffusion
Deep learning	yes
Acquisition	DIA
Also known as	DiffNovo_DIA

Code

• https://pypi.org/project/diffnovo-dia/

Not tracked on the Code activity chart: those figures come from the GitHub API, and this link is not a public GitHub repository.

Papers

• De Novo Peptide Sequencing for Data-independent Acquisition (DIA) Using Deep Learning (2025, thesis)

Authors (1)

Shiva Ebrahimi

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