Shiva Ebrahimi

5 papers in the catalog · USA

Shiva Ebrahimi: 5 papers in the catalog · USA · University of North Texas · Works on AL-DeepNovo-DIA, DiaTrans, DiffNovo

Affiliations

• University of North Texas · Department of Computer Science and Engineering

Elsewhere

ORCID 0000-0002-6256-3779 · OpenAlex

Papers

• DiffNovo: A Transformer-Diffusion Model for De Novo Peptide Sequencing (2025, Bioinformatics and Computational Biology (BICOB 2025))
• De Novo Peptide Sequencing for Data-independent Acquisition (DIA) Using Deep Learning (2025)
• Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2024, arXiv)
• Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2023, 2023 IEEE 23rd International Conference on Bioinformatics and Bioengineering (BIBE))
• Deep Active Learning for De Novo Peptide Sequencing from Data-independent-acquisition Mass Spectrometry (2022, ICML 2022 Workshop on Computational Biology)

Thesis supervisor

• Xuan Guo, for De Novo Peptide Sequencing for Data-independent Acquisition (DIA) Using Deep Learning

Methods and tools

AL-DeepNovo-DIA, DiaTrans, DiffNovo, DiffNovo-DIA

Co-authors (2)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Xuan Guo strength 3.50, 4 shared
• Jiancheng Li strength 0.50, 1 shared

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