DpNovo

algorithm · Transformer (AR)

DpNovo: algorithm · Transformer (AR). Transformer + dynamic programming

Transformer + dynamic programming

Kind	algorithm
Deep learning	yes
Acquisition	DDA
Family	Transformer (AR)

Code

• https://github.com/4chuanMcChicken/DpNovo

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Trained on

• NIST peptide tandem mass spectral libraries (H. sapiens Orbitrap HCD)

Evaluated on

• NIST peptide tandem mass spectral libraries (version not stated)
• Nine-species benchmark (version not stated)

Paper describing it

• DpNovo: A DEEP LEARNING MODEL COMBINED WITH DYNAMIC PROGRAMMING FOR DE NOVO PEPTIDE SEQUENCING (2023, thesis)

Papers using it (2)

Applications and evaluations that ran this method. They are not counted among its authors below.

• Spectra Fragment-Ion and Amino Acid Probability Prediction for Peptide Sequencing (2026, thesis)
• Tandem Mass Spectra Representation Design for Transformer-Based De Novo Peptide Sequencing (2026, thesis)

Authors (1)

Yizhou Li

Seen in the charts

• The architectures
• Code activity

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