Genomic Peptide Finder

adjacent · Homology search

Genomic Peptide Finder: adjacent · Homology search. Aligns de novo sequenced peptides directly to a genome, tolerating sequencing errors and introns, to provide proteogenomic evidence for gene annotation.

Aligns de novo sequenced peptides directly to a genome, tolerating sequencing errors and introns, to provide proteogenomic evidence for gene annotation.

Kind	adjacent
Deep learning	no
Acquisition	DDA
Also known as	GenomicPeptideFinder, GPF
Family	Homology search

Code

• https://github.com/specht/gpf

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Papers describing it (2)

• Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii (2006, PROTEOMICS, peer-reviewed)
• Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome (2011, PROTEOMICS, peer-reviewed)

Authors (13)

Jens Allmer, Bianca Naumann, Christine Markert, Monica Zhang, Michael Hippler, Michael Specht, Mario Stanke, Mia Terashima, Bianca Naumann‐Busch, Ingrid Janßen, Ricarda Höhner, Erik F. Y. Hom, Chun Liang

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