NovoBench

benchmark

NovoBench: benchmark. NeurIPS benchmark for DL de novo

NeurIPS benchmark for DL de novo

Kind

benchmark

Code

• https://github.com/Westlake-OmicsAI/NovoBench

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Deposited

• ProteomeTools (HC-PT (NovoBench)) · 2024 preprint, 2024 ML conference
• Seven-species benchmark (NovoBench split) · 2024 preprint, 2024 ML conference

Also used, purpose not recorded

• Nine-species benchmark (original (DeepNovo, 2017)) · 2024 preprint, 2024 ML conference
• Nine-species benchmark (revised (build not stated)) · 2024 preprint, 2024 ML conference

Papers describing it (2)

• NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics (2024, arXiv, preprint)
• NovoBench: Benchmarking Deep Learning-based De Novo Sequencing Methods in Proteomics (2024, NeurIPS 2024, ML conference)

Authors (9)

Jingbo Zhou, Shaorong Chen, Jun Xia, Sizhe Liu, Tianze Ling, Wenjie Du, Yue Liu, Jianwei Yin, Stan Z. Li

Seen in the charts

• Code activity
• Models and the authors behind them

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