PepExplorer
post-processor · Homology search
PepExplorer: post-processor · Homology search. Aligns de novo peptide sequences from several tools against a target-decoy database and uses a neural network to report homologous proteins at a controlled FDR.
Aligns de novo peptide sequences from several tools against a target-decoy database and uses a neural network to report homologous proteins at a controlled FDR.
| Kind | post-processor |
| Deep learning | no |
| Acquisition | DDA |
| Family | Homology search |
Papers describing it (2)
- PepExplorer: A Similarity-driven Tool for Analyzing de Novo Sequencing Results (2014, Molecular & Cellular Proteomics, peer-reviewed)
- Using PepExplorer to Filter and Organize De Novo Peptide Sequencing Results (2015, Current Protocols in Bioinformatics, peer-reviewed)
Paper using it
An application or evaluation that ran this method. It is not counted among its authors below.
- Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry (2021, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, peer-reviewed)