PepNet vs Tide false-discovery evaluation
benchmark
PepNet vs Tide false-discovery evaluation: benchmark. Compares PepNet de novo sequencing with Tide search on PXD004452, finding PepNet less accurate overall but better on spectra whose peptides are absent from the database…
Compares PepNet de novo sequencing with Tide search on PXD004452, finding PepNet less accurate overall but better on spectra whose peptides are absent from the database, and proposes de novo tagging plus database verification.
| Kind | benchmark |
| Deep learning | yes |
| Acquisition | DDA |
Paper describing it
- Evaluation of the accuracy of false alarm frequency control methods for de novo spectrum (2025, Proceedings of the Southwest State University. Series: IT Management, Computer Science, Computer Engineering. Medical Equipment Engineering, peer-reviewed)