PepNet vs Tide false-discovery evaluation
benchmark
PepNet vs Tide false-discovery evaluation: benchmark. Compares PepNet de novo sequencing with Tide search on PXD004452, finding PepNet less accurate overall but better on spectra whose peptides are absent from the database…
Compares PepNet de novo sequencing with Tide search on PXD004452, finding PepNet less accurate overall but better on spectra whose peptides are absent from the database, and proposes de novo tagging plus database verification.
| Kind | benchmark |
| Deep learning | yes |
| Acquisition | DDA |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Also used, purpose not recorded
- HeLa proteome of 12,250 protein-coding genes (as deposited)
Paper describing it
- Evaluation of the accuracy of false alarm frequency control methods for de novo spectrum (2025, Proceedings of the Southwest State University. Series: IT Management, Computer Science, Computer Engineering. Medical Equipment Engineering, peer-reviewed)