Spectralis

post-processor · CNN

Spectralis: post-processor · CNN. AA-gapped convolutional layer

AA-gapped convolutional layer

Kind	post-processor
Deep learning	yes
Acquisition	DDA
Family	CNN

Code

• https://github.com/gagneurlab/spectralis

Live stars, open issues and last-push figures are on the Code activity chart.

Benchmarks

• denovo_benchmarks: median peptide-level average precision 0.729 over 86 datasets, median rank 8 of 14 (version bm-1.0.0).

Both are mass-based matches on the tool’s most recent run. What these numbers mean.

Papers describing it (2)

• Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing (2023, bioRxiv, preprint)
• Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing (2024, Nature Communications, peer-reviewed)

Authors (7)

Daniela Klaproth-Andrade, Johannes Hingerl, Nicholas H. Smith, Jakob Träuble, Mathias Wilhelm, Julien Gagneur, Yanik Bruns

Seen in the charts

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