A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
benchmark · DDA · 1 version · 5 papers
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
| Kind | benchmark |
| Acquisition | DDA |
| Organisms | Homo sapiens (human) |
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Versions
as deposited
released 2019-07-10
Where it lives:
- PRIDE · PXD010154
Used by (5)
- Mass Spectrometry-Based Profiling of Personalized Immunopeptidomes in Thai Renal Cell Carcinoma (2026) peer-reviewed as deposited
- Learning from tandem mass spectra at scale with a self-supervised foundation model for proteomics (2026) preprint as deposited
- NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing (2024) peer-reviewed as deposited
- NovoBoard: a comprehensive framework for evaluating the false discovery rate and accuracy of de novo peptide sequencing (2024) preprint as deposited
- Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing (2024) peer-reviewed as deposited
Methods on these papers (4)
- InstaNovo-FM algorithm
- NovoBoard benchmark
- Spectralis post-processor
- Thai RCC personalised immunopeptidomics downstream-application
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.