Swine SLA-I peptide length preference (RPLD-MS)
downstream-application
Swine SLA-I peptide length preference (RPLD-MS): downstream-application. Random peptide library binding plus LC-MS/MS de novo sequencing (RPLD-MS) showed that swine SLA-113:01 binds more long peptides than SLA-104:01, explained by crystal…
Random peptide library binding plus LC-MS/MS de novo sequencing (RPLD-MS) showed that swine SLA-1*13:01 binds more long peptides than SLA-1*04:01, explained by crystal structures.
| Kind | downstream-application |
| Deep learning | no |
| Acquisition | DDA |
| Application area | Immunopeptidomics / neoantigen |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Deposited
- The length distribution of MHC-I binding peptides (as deposited)
Paper describing it
- Peptidomes and Structures Illustrate How SLA-I Micropolymorphism Influences the Preference of Binding Peptide Length (2022, Frontiers in Immunology, peer-reviewed)