Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
deposit · 1 version · 6 papers
Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
| Kind | deposit |
Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
Versions
as deposited
Where it lives:
- MassIVE · MSV000080527
Evaluated on by (3)
- Accurate and ultra-fast de novo HLA-I immunopeptide sequencing with FoxNovo (2026) preprint as deposited
- Uncovering Thousands of New Peptides with Sequence-Mask-Search Hybrid De Novo Peptide Sequencing Framework (2019) peer-reviewed as deposited
- Uncovering thousands of new HLA antigens and phosphopeptides with deep learning-based sequence-mask-search de novo peptide sequencing framework (2019) preprint as deposited
Used by (3)
Papers that ran on it where the catalog has not recorded whether for training or for evaluation.
- The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I–Associated Peptides (2023) peer-reviewed as deposited
- Unsupervised Mining of HLA-I Peptidomes Reveals New Binding Motifs and Potential False Positives in the Community Database (2022) peer-reviewed as deposited
- Unsupervised mining of HLA-I peptidomes reveals new binding motifs and substantial false positives in community database (2021) preprint as deposited
Methods on these papers (4)
- FoxNovo algorithm
- Noncanonical MAP atlas downstream-application
- SMSNet algorithm
- Unsupervised HLA-I peptidome mining with SMSNet downstream-application
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.