Noncanonical MAP atlas
downstream-application
Noncanonical MAP atlas: downstream-application. A proteogenomic pipeline based on deep-learning de novo sequencing plus open search mapped 8,601 noncanonical MHC class I peptides from noncoding regions across 11…
A proteogenomic pipeline based on deep-learning de novo sequencing plus open search mapped 8,601 noncanonical MHC class I peptides from noncoding regions across 11 cancer types.
| Kind | downstream-application |
| Deep learning | yes |
| Acquisition | DDA |
| Application area | Immunopeptidomics / neoantigen |
Paper describing it
- The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I–Associated Peptides (2023, Cancer Immunology Research, peer-reviewed)