Delft University of Technology
Delft, Netherlands · 23 authors
Delft University of Technology (Delft, Netherlands): 23 authors and 19 papers in the de novo peptide sequencing catalog.
Departments
- Department of Bionanoscience
- Department of Biotechnology
Papers (19)
- Learning from tandem mass spectra at scale with a self-supervised foundation model for proteomics (2026, bioRxiv)
- InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics (2026, Nature Communications)
- A Framework for Database Search with AI Models in Mass Spectrometry-Based Proteomics (2026, Journal of Proteome Research)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Generalizable Direct Protein Sequencing With InstaNexus (2026, Molecular & Cellular Proteomics)
- Wastewater metaproteomics: tracking microbial and human protein biomarkers (2025, ISME Communications)
- Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases (2025, Cell Systems)
- De novo peptide sequencing rescoring and FDR estimation with Winnow (2025, arXiv)
- Generalizable direct protein sequencing with InstaNexus (2025, bioRxiv)
- InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics (2025, bioRxiv)
- InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments (2025, Nature Machine Intelligence)
- Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases (2024, bioRxiv)
- NovoLign: metaproteomics by sequence alignment (2024, bioRxiv)
- NovoLign: metaproteomics by sequence alignment (2024, ISME Communications)
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments (2023, bioRxiv)
- Database-independent de novo metaproteomics of complex microbial communities (2021, Cell Systems)
- Quantitative profiling of microbial communities by de novo metaproteomics (2020, bioRxiv)
- Screening Method for the Discovery of Potential Bioactive Cysteine-Containing Peptides Using 3D Mass Mapping (2015, Journal of the American Society for Mass Spectrometry)
- De novo sequencing of two novel peptides homologous to calcitonin-like peptides, from skin secretion of the Chinese Frog, Odorrana schmackeri (2015, EuPA Open Proteomics)