Indiana University Bloomington
Bloomington, USA · 15 authors
Indiana University Bloomington (Bloomington, USA): 15 authors and 11 papers in the de novo peptide sequencing catalog.
Departments
- Luddy School of Informatics, Computing, and Engineering
Papers (11)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Accurate de novo peptide sequencing using fully convolutional neural networks (2023, Nature Communications)
- PepNet: A Fully Convolutional Neural Network for De novo Peptide Sequencing (2022, Research Square)
- Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma (2021, Molecular & Cellular Proteomics)
- Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry (2018, Lecture Notes in Computer Science)
- Investigation of VUV photodissociation propensities using peptide libraries (2011, International Journal of Mass Spectrometry)
- De NovoSequencing of Tryptic Peptides Derived fromDeinococcus radioduransRibosomal Proteins Using 157 nm Photodissociation MALDI TOF/TOF Mass Spectrometry (2010, Journal of Proteome Research)
- Peptide de Novo Sequencing Using 157 nm Photodissociation in a Tandem Time-of-Flight Mass Spectrometer (2010, Analytical Chemistry)
- Peptide de Novo Sequencing Facilitated by a Dual-Labeling Strategy (2005, Analytical Chemistry)
- Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)