Indiana University School of Medicine

Indianapolis · 1 author

Indiana University School of Medicine (Indianapolis): 1 author and 11 papers in the de novo peptide sequencing catalog.

Departments

Center for Computational Biology and Bioinformatics

Authors (1)

Papers (11)

AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
Generative AI Models for the Protein Scaffold Filling Problem (2025, Journal of Computational Biology)
Deep Learning Approaches for the Protein Scaffold Filling Problem (2022, 2022 IEEE 34th International Conference on Tools with Artificial Intelligence (ICTAI))
De Novo Sequencing of Peptides from High‐Resolution Bottom‐Up Tandem Mass Spectra using Top‐Down Intended Methods (2017, PROTEOMICS)
Filling a Protein Scaffold With a Reference (2017, IEEE Transactions on NanoBioscience)
Top-down analysis of protein samples by de novo sequencing techniques (2016, Bioinformatics)
Filling a Protein Scaffold with a Reference (2016, Lecture Notes in Computer Science)
De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra (2015, Journal of Proteome Research)
De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra (2014, Journal of Proteome Research)
Better score function for peptide identification with ETD MS/MS spectra (2010, BMC Bioinformatics)
Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy (2009, Bioinformatics)

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