Filling a Protein Scaffold with a Reference

peer-reviewed · Lecture Notes in Computer Science · 2016

peer-reviewed · Lecture Notes in Computer Science · 2016. Letu Qingge et al.

Date	2016-05-27
Type	peer-reviewed
Venue	Lecture Notes in Computer Science
Publisher	Springer International Publishing
Contribution	post-processor
DOI	10.1007/978-3-319-38782-6_15
Citations (OpenAlex)	0
Venue 2-year citedness	1.54

Authors

1. Letu Qingge · Montana State University, North Carolina Agricultural and Technical State University, Texas A&M University – Kingsville
2. Xiaowen Liu · Indiana University Indianapolis, Indiana University School of Medicine, Indiana University-Purdue University Indianapolis, Tulane University, University of Waterloo
3. Farong Zhong · Zhejiang Normal University
4. Binhai Zhu (Montana State University) · Montana State University, North Carolina Agricultural and Technical State University

Methods and tools

• Protein scaffold filling with a reference: Fills missing residues in de novo protein scaffolds against a homologous reference to maximise BLOSUM62 score, with exact and greedy algorithms tested on antibodies.

Cites (6)

• De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra (2014) both
• Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy (2009) both
• Automated de novo protein sequencing of monoclonal antibodies (2008) both
• An effective algorithm for peptide de novo sequencing from MS/MS spectra (2005) both
• Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004) both
• PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003) crossref

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