Technical University of Denmark
Copenhagen, Denmark, Kongens Lyngby, Denmark · 39 authors
Technical University of Denmark (Copenhagen, Denmark, Kongens Lyngby, Denmark): 39 authors and 21 papers in the de novo peptide sequencing catalog.
Departments
- Center for Translational Protein Design
- Department of Applied Mathematics and Computer Science
- Department of Biotechnology and Biomedicine
- Novo Nordisk Foundation Biotechnology Research Institute for the Green Transition
- Novo Nordisk Foundation Center for Biosustainability
Papers (21)
- Learning from tandem mass spectra at scale with a self-supervised foundation model for proteomics (2026, bioRxiv)
- InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics (2026, Nature Communications)
- A Framework for Database Search with AI Models in Mass Spectrometry-Based Proteomics (2026, Journal of Proteome Research)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Generalizable Direct Protein Sequencing With InstaNexus (2026, Molecular & Cellular Proteomics)
- Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases (2025, Cell Systems)
- De novo peptide sequencing rescoring and FDR estimation with Winnow (2025, arXiv)
- Generalizable direct protein sequencing with InstaNexus (2025, bioRxiv)
- InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics (2025, bioRxiv)
- InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments (2025, Nature Machine Intelligence)
- Interferon-α promotes HLA-B-restricted presentation of conventional and alternative antigens in human pancreatic β-cells (2025, Nature Communications)
- Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases (2024, bioRxiv)
- MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer (2024, Nature Communications)
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments (2023, bioRxiv)
- N -terminal chemical derivatization of peptides with 4-formyl-benzenesulfonic acid under charge reduction conditions and electrospray positive and negative tandem mass spectrometry de novo sequencing (2023)
- Direct Identification of Urinary Tract Pathogens by MALDI-TOF/TOF Analysis and De Novo Peptide Sequencing (2022, Molecules)
- MARS: Improved De Novo Peptide Candidate Selection for Non-Canonical Antigen Target Discovery in Cancer (2022, Research Square)
- De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma (2021, Analytical Chemistry)
- Universal amyloidogenicity of patient-derived immunoglobulin light chains (2021, bioRxiv)
- De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma (2021, ChemRxiv)
- A workflow for peptide-based proteomics in a poorly sequenced plant: A case study on the plasma membrane proteome of banana (2011, Journal of Proteomics)