BERT model for de novo protein sequencing using tandem mass spectra
abstract · Proceedings of the International Conference “Mathematical Biology and Bioinformatics” · 2024
abstract · Proceedings of the International Conference “Mathematical Biology and Bioinformatics” · 2024. D.V. Petrovsky et al. Модель BERT в секвенировании белков de novo с использованием тандемных масс-спектровПетровский Д.В. 1…
| Date | 2024-10-27 |
| Type | abstract |
| Venue | Proceedings of the International Conference “Mathematical Biology and Bioinformatics” |
| Publisher | IMPB RAS - Branch of KIAM RAS |
| Contribution | algorithm |
| DOI | 10.17537/icmbb24.46 |
| Citations (OpenAlex) | 0 |
Abstract
Модель BERT в секвенировании белков de novo с использованием тандемных масс-спектровПетровский Д.В. 1 , Никольский К.С. 1 , Куликова Л.И.2,3 , Руднев В.Р.1,3 , Кайшева А.Л. 1 1 Научно-исследовательский институт биомедицинской химии имени В.Н.Ореховича, Москва, Россия 2 Институт математических проблем биологии РАН -филиал ИПМ РАН им.М.В.Келдыша, Пущино, Россия 3 Институт теоретической и экспериментальной биофизики РАН, Пущино, Россия petro2017
Methods and tools
- PowerNovo: Transformer + BERT ensemble
Cites (11)
- PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models (2024) crossref
- Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2023) crossref
- Accurate de novo peptide sequencing using fully convolutional neural networks (2023) crossref
- Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly (2023) crossref
- De novo mass spectrometry peptide sequencing with a transformer model (2022) crossref
- The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms (2022) crossref
- Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices (2021) crossref
- Uncovering Thousands of New Peptides with Sequence-Mask-Search Hybrid De Novo Peptide Sequencing Framework (2019) crossref
- De novo peptide sequencing by deep learning (2017) crossref
- Novor: Real-Time Peptide de Novo Sequencing Software (2015) crossref
- Algorithms for the de novo sequencing of peptides from tandem mass spectra (2011) crossref