PowerNovo
algorithm · Transformer (AR)
PowerNovo: algorithm · Transformer (AR). Transformer + BERT ensemble
Transformer + BERT ensemble
| Kind | algorithm |
| Deep learning | yes |
| Acquisition | DDA |
| Family | Transformer (AR) |
Code
Live stars, open issues and last-push figures are on the Code activity chart.
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Trained on
- MassIVE-KB (version not stated) · 2024 abstract
- MassIVE-KB (v1) · 2024 peer-reviewed
- NIST peptide tandem mass spectral libraries (version not stated) · 2024 peer-reviewed
Evaluated on
- Anti-FLAG-M2 antibody sequencing (as deposited) · 2024 peer-reviewed
- MassIVE-KB (v1) · 2024 peer-reviewed
- Monoclonal antibody de novo assembly (as deposited) · 2024 peer-reviewed, 2024 abstract
- NIST peptide tandem mass spectral libraries (version not stated) · 2024 peer-reviewed
Papers describing it (2)
- PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models (2024, Scientific Reports, peer-reviewed)
- BERT model for de novo protein sequencing using tandem mass spectra (2024, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, abstract)