PowerNovo

algorithm · Transformer (AR)

PowerNovo: algorithm · Transformer (AR). Transformer + BERT ensemble

Transformer + BERT ensemble

Kind	algorithm
Deep learning	yes
Acquisition	DDA
Family	Transformer (AR)

Code

• https://github.com/protdb/PowerNovo

Live stars, open issues and last-push figures are on the Code activity chart.

Papers describing it (2)

• PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models (2024, Scientific Reports, peer-reviewed)
• BERT model for de novo protein sequencing using tandem mass spectra (2024, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, abstract)

Authors (9)

Denis V. Petrovskiy, Kirill S. Nikolsky, Liudmila I. Kulikova, Vladimir R. Rudnev, Tatiana V. Butkova, Kristina A. Malsagova, Arthur T. Kopylov, Anna L. Kaysheva, D.V. Petrovsky

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