PROTEOMICS
27 papers in the catalog
27 de novo peptide sequencing papers published in PROTEOMICS, catalogued with authors, methods and citation counts.
Papers
- Enrichment and fragmentation approaches for enhanced detection and characterization of endogenous glycosylated neuropeptides (2023, peer-reviewed)
- DDASSQ: An open‐source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform (2021, peer-reviewed)
- De Novo Sequencing of Peptides from High‐Resolution Bottom‐Up Tandem Mass Spectra using Top‐Down Intended Methods (2017, peer-reviewed)
- Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome (2016, peer-reviewed)
- Identification of phosphopeptides with unknown cleavage specificity by a de novo sequencing assisted database search strategy (2014, peer-reviewed)
- Proteomic studies highlight outer‐membrane proteins related to biofilm development in the marine bacterium Pseudoalteromonas sp. D41 (2012, peer-reviewed)
- Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome (2011, peer-reviewed)
- Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody (2011, peer-reviewed)
- Protein expression during the embryonic development of a gastropod (2010, peer-reviewed)
- OVNIp: An open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing (2010, peer-reviewed)
- Plant‐extract‐induced changes in the proteome of the soil‐borne pathogenic fungus Thielaviopsis basicola (2010, peer-reviewed)
- LysNDeNovo: An algorithm enabling de novo sequencing of Lys‐N generated peptides fragmented by electron transfer dissociation (2010, peer-reviewed)
- 2‐D DIGE analysis of Senegalese sole (Solea senegalensis) testis proteome in wild‐caught and hormone‐treated F1 fish (2009, peer-reviewed)
- Exploring membrane and cytoplasm proteomic responses of Alkalimonas amylolytica N10 to different external pHs with combination strategy of de novo peptide sequencing (2009, peer-reviewed)
- Simplified validation of borderline hits of database searches (2008, peer-reviewed)
- A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments (2007, peer-reviewed)
- Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing (2007, peer-reviewed)
- A proteomic‐based approach for the characterization of some major structural proteins involved in host–parasite relationships from the silkworm parasite Nosema bombycis (Microsporidia) (2007, peer-reviewed)
- Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii (2006, peer-reviewed)
- Mapping the proteome of thylakoid membranes by de novo sequencing of intermembrane peptide domains (2006, peer-reviewed)
- De novo sequence analysis of N‐terminal sulfonated peptides after in‐gel guanidination (2005, peer-reviewed)
- Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus (2005, peer-reviewed)
- The Holm Oak leaf proteome: Analytical and biological variability in the protein expression level assessed by 2‐DE and protein identification tandem mass spectrometry de novo sequencing and sequence similarity searching (2005, peer-reviewed)
- Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR‐1 using two‐dimensional polyacrylamide gel electrophoresis and de novo sequencing methods (2004, peer-reviewed)
- Database‐independent, database‐dependent, and extended interpretation of peptide mass spectra in VEMS V2.0 (2004, peer-reviewed)
- Highly informative proteome analysis by combining improved N ‐terminal sulfonation for de novo peptide sequencing and online capillary reverse‐phase liquid chromatography/tandem mass spectrometry (2004, peer-reviewed)
- Automatedde novo sequencing of proteins using the differential scanning technique (2001, peer-reviewed)