Jeroen Van Goey

Just Another Genome Hacker

About Me

Jeroen Van Goey
Fascinated by the intersection of AI and science. Working on Machine Learning for personalized cancer vaccines, de novo peptide sequencing and signal peptides.

Bluesky | GitHub | LinkedIn


Projects

InstaNovo

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

Snakes and Sequences: Senegalese Serpent Venom Sequencing Hackathon

This hackathon focused on improving the predictions of the de novo peptide sequencing model InstaNovo using filtering and recalibration on a dataset of venoms of African snakes.

Desert locust breeding ground prediction hackathon

A machine learning hackathon to predict desert locust breeding grounds using remote sensing data and to improve model performance on the Zindi leaderboard.

euler

My solutions to Project Euler.

adventofcode

My solutions to Advent of Code.


Experience

InstaDeep

Staff Software Engineer in BioAI - Machine Learning for personalized cancer vaccines,
August 2022 - Present

Barco

Sr. Software Development Engineer - Machine Learning for dermatology,
February 2020 - August 2022

BASF

Bioinformatics Researcher - Manager of the Python and R Platforms,
August 2018 - January 2020


Skills

Languages & Frameworks

  • Python: pandas, NumPy, Tensorflow, BioPython, Jax, …

Bioinformatics

  • BLAST, ClustalW, Snakemake, BioNumerics, …

Other

  • Docker, Amazon Web Services (AWS), CI/CD, …