CycloNovo

algorithm · Graph / DP

CycloNovo: algorithm · Graph / DP. Cyclopeptide sequencing

Cyclopeptide sequencing

Kind	algorithm
Deep learning	no
Acquisition	DDA
Family	Graph / DP

Code

• https://github.com/bbehsaz/cyclonovo

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Also used, purpose not recorded

• GNPS - KendrickMassFilter_EvaluationDataset_PUBLIC (as deposited) · 2019 preprint, 2020 peer-reviewed
• GNPS - Streptomyces on A1, MS and R5 agar (as deposited) · 2019 preprint, 2020 peer-reviewed

Papers describing it (2)

• De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments (2019, bioRxiv, preprint)
• De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems, peer-reviewed)

Authors (10)

Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner, Fernando Vargas

Seen in the charts

• The architectures
• Code activity
• Models and the authors behind them

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