Pavel A. Pevzner

10 papers in the catalog · Germany, USA

Pavel A. Pevzner: 10 papers in the catalog · Germany, USA · Max Planck Institute of Molecular Cell Biology and Genetics, University of California San Diego · Works on Automated mAb de novo (Bandeira SPS), CycloNovo, MS BLAST validation

Affiliations

Max Planck Institute of Molecular Cell Biology and Genetics
University of California San Diego · Bioinformatics Program
University of California San Diego · Department of Computer Science and Engineering
University of California San Diego · Department of Electrical and Computer Engineering and Department of Computer Science and Engineering
University of Southern California · Departments of Mathematics, Computer Science and Molecular Biology

Elsewhere

ORCID 0000-0002-0418-165X · OpenAlex

Papers

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems)
UniNovo: a universal tool for de novo peptide sequencing (2013, Bioinformatics)
Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry)
Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)
De novo peptide sequencing via tandem mass spectrometry (1999, Journal of Computational Biology)

Methods and tools

Automated mAb de novo (Bandeira SPS), CycloNovo, MS BLAST validation, MS-Dictionary, MS-Profile, PepNovo, Sherenga, Shotgun Protein Sequencing, UniNovo

Co-authors (31)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Ari Frank strength 1.42, 3 shared
Nuno Bandeira strength 1.42, 4 shared
Sangtae Kim strength 1.33, 3 shared
Kyowon Jeong strength 0.50, 1 shared
Haixu Tang strength 0.33, 1 shared
Nitin Gupta strength 0.33, 1 shared
Vineet Bafna strength 0.33, 1 shared
David Arnott strength 0.25, 1 shared
James E. Vath strength 0.25, 1 shared
Jennie R. Lill strength 0.25, 1 shared
Karl R. Clauser strength 0.25, 1 shared
Michael L. Nielsen strength 0.25, 1 shared
Mikhail M. Savitski strength 0.25, 1 shared
Roman A. Zubarev strength 0.25, 1 shared
Theresa A. Addona strength 0.25, 1 shared
Vineet Pham strength 0.25, 1 shared
Vlado Dancík strength 0.25, 1 shared
Andrej Shevchenko strength 0.17, 1 shared
Henrik Thomas strength 0.17, 1 shared
Natalie Wielsch strength 0.17, 1 shared
Patrice Waridel strength 0.17, 1 shared
Vineeth Surendranath strength 0.17, 1 shared
Alexey Gurevich strength 0.11, 1 shared
Andrey Prjibelski strength 0.11, 1 shared
Bahar Behsaz strength 0.11, 1 shared
Fernando Vargas strength 0.11, 1 shared
Hosein Mohimani strength 0.11, 1 shared
Joshua S. Mylne strength 0.11, 1 shared
Larry Smarr strength 0.11, 1 shared
Mark Fisher strength 0.11, 1 shared
Pieter C. Dorrestein strength 0.11, 1 shared

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