De novo peptide databases for Protein-SIP
downstream-application
De novo peptide databases for Protein-SIP: downstream-application. Builds peptide databases from de novo sequencing of the raw data and uses them for protein-based stable isotope probing of microbial communities, reaching species-level…
Builds peptide databases from de novo sequencing of the raw data and uses them for protein-based stable isotope probing of microbial communities, reaching species-level resolution.
| Kind | downstream-application |
| Deep learning | yes |
| Acquisition | DDA |
| Application area | Metaproteomics |
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Deposited
Also used, purpose not recorded
Papers describing it (2)
- De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2024, bioRxiv, preprint)
- De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2025, Environmental Microbiome, peer-reviewed)