Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

deposit · 1 version · 6 papers

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Kind	deposit
Organisms	Eukaryota (eucaryotes), Bacteria, Archaea, Viruses

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Versions

as deposited

released 2017-03-20

Where it lives:

• PRIDE · PXD006118

Evaluated on by (1)

• π-MNovo improves de novo peptide sequencing through microbial-domain adaptation and evidence-guided candidate selection (2026) preprint as deposited

Used by (5)

Papers that ran on it where the catalog has not recorded whether for training or for evaluation.

• De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2025) peer-reviewed as deposited
• De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2024) preprint as deposited
• NovoLign: metaproteomics by sequence alignment (2024) peer-reviewed as deposited
• NovoLign: metaproteomics by sequence alignment (2024) preprint as deposited
• Quantitative profiling of microbial communities by de novo metaproteomics (2020) preprint as deposited

Methods on these papers (4)

• De novo peptide databases for Protein-SIP downstream-application
• NovoBridge downstream-application
• NovoLign downstream-application
• π-MNovo algorithm

Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.

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• The data underneath

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