Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
deposit · 1 version · 6 papers
Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
| Kind | deposit |
| Organisms | Eukaryota (eucaryotes), Bacteria, Archaea, Viruses |
Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
Versions
as deposited
released 2017-03-20
Where it lives:
- PRIDE · PXD006118
Used by (6)
- π-MNovo improves de novo peptide sequencing through microbial-domain adaptation and evidence-guided candidate selection (2026) preprint as deposited
- De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2025) peer-reviewed as deposited
- De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution (2024) preprint as deposited
- NovoLign: metaproteomics by sequence alignment (2024) preprint as deposited
- NovoLign: metaproteomics by sequence alignment (2024) peer-reviewed as deposited
- Quantitative profiling of microbial communities by de novo metaproteomics (2020) preprint as deposited
Methods on these papers (4)
- De novo peptide databases for Protein-SIP downstream-application
- NovoBridge downstream-application
- NovoLign downstream-application
- π-MNovo algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.