NovoBridge

downstream-application

NovoBridge: downstream-application. A database-independent metaproteomics pipeline that maps de novo peptide sequences to taxonomy and function, giving quantitative community profiles without a…

A database-independent metaproteomics pipeline that maps de novo peptide sequences to taxonomy and function, giving quantitative community profiles without a sample-specific database.

Kind	downstream-application
Deep learning	no
Acquisition	DDA
Application area	Metaproteomics

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Also used, purpose not recorded

• Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics (as deposited) · 2020 preprint

Papers describing it (2)

• Quantitative profiling of microbial communities by de novo metaproteomics (2020, bioRxiv, preprint)
• Database-independent de novo metaproteomics of complex microbial communities (2021, Cell Systems, peer-reviewed)

Authors (8)

Hugo B.C. Kleikamp, Mario Pronk, Claudia G. Tugui, Leonor Guedes da Silva, Ben Abbas, Yue Mei Lin, Mark C. M. van Loosdrecht, Martin Pabst

Seen in the charts

• Application areas
• Models and the authors behind them

Back to the full map