NovoTax

downstream-application

NovoTax: downstream-application. Open-source pipeline that identifies prokaryotic species and strain directly from bottom-up proteomics data by searching de novo peptide sequences against an extensive…

Open-source pipeline that identifies prokaryotic species and strain directly from bottom-up proteomics data by searching de novo peptide sequences against an extensive proteome database; also finds contaminants and abundant community members.

Kind	downstream-application
Acquisition	DDA
Application area	Metaproteomics

Code

• https://github.com/mateuslab-prot/NovoTax

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Paper describing it

• NovoTax: prokaryotic strain identification from mass spectrometry-based proteomics data (2026, bioRxiv, preprint)

Authors (2)

Dennis Svedberg, André Mateus

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• Application areas
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