NovoTax

downstream-application

NovoTax: downstream-application. Open-source pipeline that identifies prokaryotic species and strain directly from bottom-up proteomics data by searching de novo peptide sequences against an extensive…

Open-source pipeline that identifies prokaryotic species and strain directly from bottom-up proteomics data by searching de novo peptide sequences against an extensive proteome database; also finds contaminants and abundant community members.

Kind downstream-application
Acquisition DDA
Application area Metaproteomics

Code

Live stars, open issues and last-push figures are on the Code activity chart.

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Also used, purpose not recorded

Paper describing it

Authors (2)

Dennis Svedberg, André Mateus

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