DeNovo Peptide Identification Deep Learning Training Set
deposit · 1 version · 1 paper
DeNovo Peptide Identification Deep Learning Training Set
| Kind | deposit |
| Organisms | Cupriavidus necator (strain atcc 43291 / dsm 13513 / n-1) (ralstonia eutropha), Pseudomonas putida kt2440, Streptomyces sp., Listeria monocytogenes serotype 1/2a (strain 10403s), Bifidobacterium bifidum dsm 20456 = jcm 1255, Bacillus subtilis subsp. subtilis str. ncib 3610, Fibrobacter succinogenes subsp. succinogenes s85, Chryseobacterium indologenes, Delftia acidovorans (strain dsm 14801 / sph-1), Shewanella oneidensis (strain mr-1), Clostridium ljungdahlii (strain atcc 55383 / dsm 13528 / petc), Coprococcus comes atcc 27758, Lactobacillus casei subsp. casei atcc 393, Bacteria, Faecalibacterium prausnitzii sl3/3, Bacteroides fragilis (strain 638r), Citrobacter freundii, Paenibacillus polymyxa atcc 842, Anaerococcus hydrogenalis dsm 7454, Algoriphagus marincola hl-49, Bacteria, Ruminococcus gnavus atcc 29149, Bacteroides thetaiotaomicron (strain atcc 29148 / dsm 2079 / nctc 10582 / e50 / vpi-5482), Bacteria, Methylomicrobium alcaliphilum (strain dsm 19304 / ncimb 14124 / vkm b-2133 / 20z), Rhizobium radiobacter (agrobacterium tumefaciens) (agrobacterium radiobacter), Francisella tularensis subsp. novicida (strain u112), Cellulophaga baltica 18, Cyanobacterium stanieri, Rhodopseudomonas palustris, Prevotella ruminicola (strain atcc 19189 / jcm 8958 / 23), Bifidobacterium longum subsp. infantis (strain atcc 15697 / dsm 20088 / jcm 1222 / nctc 11817 / s12), Sulfobacillus thermosulfidooxidans, Dorea formicigenerans, Synechococcus elongatus (strain pcc 7942) (anacystis nidulans r2), Rhodococcus sp. (strain rha1), Bacillus subtilis subsp. subtilis str. 168, Streptomyces griseorubens, Micrococcus luteus (micrococcus lysodeikticus), Campylobacter jejuni, Legionella pneumophila, Streptococcus agalactiae, Paracoccus denitrificans, Mycobacterium smegmatis, Alcaligenes faecalis, Cellvibrio gilvus (strain atcc 13127 / nrrl b-14078), Acidiphilium cryptum (strain jf-5), Myxococcus xanthus dz2, Bacillus cereus (strain atcc 14579 / dsm 31), Stigmatella aurantiaca (strain dw4/3-1) |
DeNovo Peptide Identification Deep Learning Training Set
Versions
as deposited
released 2018-06-12
Where it lives:
- PRIDE · PXD010000
Used by (1)
- Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics (2022) peer-reviewed as deposited
Methods on these papers (1)
- Kaiko downstream-application
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.