Anti-FLAG-M2 antibody sequencing
deposit · DDA · 1 version · 13 papers
MS-based sequencing of the anti-FLAG-M2 antibody, deposited as a study result and reused as an antibody test case.
| Kind | deposit |
| Acquisition | DDA |
| Organisms | Mus musculus |
MS-based sequencing of the anti-FLAG-M2 antibody, deposited as a study result and reused as an antibody test case.
Versions
as deposited
Where it lives:
- PRIDE · PXD023419
Evaluated on by (3)
- π-HelixNovo2: Making Accurate Online De Novo Peptide Sequencing Available to All (2026) peer-reviewed as deposited
- PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models (2024) peer-reviewed as deposited
- Introducing π-HelixNovo for practical large-scale de novo peptide sequencing (2024) peer-reviewed as deposited
Used by (10)
Papers that ran on it where the catalog has not recorded whether for training or for evaluation.
- Reference-free protein sequencing by consensus assembly of redundant de novo peptide reads (2026) preprint as deposited
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026) preprint as deposited
- A Handle on Mass Coincidence Errors in De Novo Sequencing of Antibodies by Bottom-up Proteomics (2024) peer-reviewed as deposited
- De novo antibody sequencing based on mass spectrometry (2024) thesis as deposited
- Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly (2023) peer-reviewed as deposited
- Template-Based Assembly of Proteomic Short Reads For De Novo Antibody Sequencing and Repertoire Profiling (2022) peer-reviewed as deposited
- Current state, existing challenges, and promising progress for de novo sequencing and assembly of monoclonal antibodies (2022) preprint as deposited
- Template-based assembly of proteomic short reads for de novo antibody sequencing and repertoire profiling (2022) preprint as deposited
- Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme (2021) peer-reviewed as deposited
- Mass spectrometry-based de novo sequencing of the anti-FLAG-M2 antibody using multiple proteases and a dual fragmentation scheme (2021) preprint as deposited
Methods on these papers (9)
- Anti-MUC1 139H2 reverse engineering downstream-application
- De novo evaluation for monoclonal-antibody assembly benchmark
- Living proteomics benchmark benchmark
- Multi-protease dual-fragmentation antibody sequencing downstream-application
- PowerNovo algorithm
- Stitch post-processor
- borgonovo post-processor
- π-HelixNovo algorithm
- π-HelixNovo2 algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.