High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan Africa
deposit · DDA · 1 version · 5 papers
High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan Africa
| Kind | deposit |
| Acquisition | DDA |
| Organisms | Bitis gabonica, Naja nivea, Naja annulifera, Naja anchietae, Naja katiensis, Dendroaspis polylepis, Echis pyramidum, Bitis arietans, Naja nigricincta, Cerastes cerastes, Bitis rhinoceros, Naja pallida, Dendroaspis angusticeps (eastern green mamba) (naja angusticeps), Naja ashei, Echis leucogaster, Echis ocellatus, Dendroaspis viridis, Naja senegalensis, Bitis nasicornis, Dendroaspis jamesoni, Naja nubiae, Hemachatus haemachatus, Naja mossambica, Naja haje, Naja nigricollis, Naja melanoleuca |
High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan Africa
Versions
as deposited
released 2022-08-19
Where it lives:
- PRIDE · PXD036161
Used by (5)
- Learning from tandem mass spectra at scale with a self-supervised foundation model for proteomics (2026) preprint as deposited
- De novo peptide sequencing rescoring and FDR estimation with Winnow (2025) preprint as deposited
- InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments (2025) peer-reviewed as deposited
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments (2023) preprint as deposited
- De novo Peptide Sequencing (2016) peer-reviewed as deposited
Methods on these papers (5)
- De novo peptide sequencing (Proteome Informatics chapter) review
- InstaNovo algorithm
- InstaNovo+ algorithm
- InstaNovo-FM algorithm
- Winnow post-processor
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.