The Scripps Research Institute
La Jolla, USA · 10 authors
The Scripps Research Institute (La Jolla, USA): 10 authors and 15 papers in the de novo peptide sequencing catalog.
Departments
- SR11 Department of Cell Biology
Papers (15)
- Identification of broadly inhibitory anti-PfEMP1 antibodies by mass spectrometry sequencing of plasma IgG from a malaria-exposed child (2025, Proceedings of the National Academy of Sciences)
- MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets (2023, PLOS Computational Biology)
- MetaNovo: a probabilistic approach to peptide discovery in complex metaproteomic datasets (2019, bioRxiv)
- PepExplorer: A Similarity-driven Tool for Analyzing de Novo Sequencing Results (2014, Molecular & Cellular Proteomics)
- Constrained De Novo Sequencing of Conotoxins (2012, Journal of Proteome Research)
- ScanRanker: Quality Assessment of Tandem Mass Spectra via Sequence Tagging (2011, Journal of Proteome Research)
- Constrained De Novo Sequencing of Peptides with Application to Conotoxins (2011, Lecture Notes in Computer Science)
- DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring (2008, Journal of Proteome Research)
- A Hybrid Method for Peptide Identification Using Integer Linear Optimization, Local Database Search, and Quadrupole Time-of-Flight or OrbiTrap Tandem Mass Spectrometry (2008, Journal of Proteome Research)
- De novo peptide identification via mixed-integer linear optimization and tandem mass spectrometry (2008, Computer Aided Chemical Engineering)
- De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization (2007, Analytical Chemistry)
- A mixed-integer optimization framework for de novo peptide identification (2007, AIChE Journal)
- Algorithms for de novo peptide sequencing using tandem mass spectrometry (2004, Drug Discovery Today: BIOSILICO)
- GutenTag: High-Throughput Sequence Tagging via an Empirically Derived Fragmentation Model (2003, Analytical Chemistry)
- A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry (2003, Journal of Computational Biology)