Constrained De Novo Sequencing of Peptides with Application to Conotoxins
peer-reviewed · Lecture Notes in Computer Science · 2011
peer-reviewed · Lecture Notes in Computer Science · 2011. Swapnil Bhatia et al.
| Date | 2011-03-23 |
| Type | peer-reviewed |
| Venue | Lecture Notes in Computer Science |
| Publisher | Springer Berlin Heidelberg |
| Contribution | algorithm |
| DOI | 10.1007/978-3-642-20036-6_2 |
| Citations (OpenAlex) | 8 |
| Venue 2-year citedness | 1.54 |
Methods and tools
- Conovo: Constrained de novo sequencing algorithm for peptide families such as conotoxins.
Cites (21)
- Top-Down de Novo Protein Sequencing of a 13.6 kDa Camelid Single Heavy Chain Antibody by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight/Time-of-Flight Mass Spectrometry (2010) crossref
- Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy (2009) crossref
- Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing (2009) crossref
- Automated de novo protein sequencing of monoclonal antibodies (2008) crossref
- Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins (2007) crossref
- Protein identification by spectral networks analysis (2007) crossref
- Lookup Peaks: A Hybrid of de Novo Sequencing and Database Search for Protein Identification by Tandem Mass Spectrometry (2007) crossref
- De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007) crossref
- De Novo Sequencing and Disulfide Mapping of a Bromotryptophan-Containing Conotoxin by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (2006) crossref
- De novo proteomic sequencing of a monoclonal antibody raised against OX40 ligand (2006) crossref
- De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning (2006) crossref
- Proteomics-Grade de Novo Sequencing Approach (2005) crossref
- NovoHMM: A Hidden Markov Model for de Novo Peptide Sequencing (2005) crossref
- PepNovo: de novo peptide sequencing via probabilistic network modeling (2005) crossref
- PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003) crossref
- A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry (2001) crossref
- Implementation and Uses of Automated de Novo Peptide Sequencing by Tandem Mass Spectrometry (2001) crossref
- Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching (2001) crossref
- De Novo Peptide Sequencing by Two-Dimensional Fragment Correlation Mass Spectrometry (2000) crossref
- De novo peptide sequencing via tandem mass spectrometry (1999) crossref
- Fast algorithm for peptide sequencing by mass spectroscopy (1990) crossref