University of Copenhagen
Copenhagen, Denmark · 52 authors
University of Copenhagen (Copenhagen, Denmark): 52 authors and 26 papers in the de novo peptide sequencing catalog.
Departments
- Centre for GeoGenetics, Natural History Museum of Denmark
- Department of Biology
- Evolutionary Genomics Section, Globe Institute
- Globe Institute
- Lundbeck Foundation GeoGenetics Centre, Globe Institute
- Novo Nordisk Foundation Center for Protein Research
Papers (26)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- Early maturation of host antimicrobial peptide defences is associated with host–pathogen coexistence (2026, Nature Chemical Biology)
- Identification of broadly inhibitory anti-PfEMP1 antibodies by mass spectrometry sequencing of plasma IgG from a malaria-exposed child (2025, Proceedings of the National Academy of Sciences)
- Enamel proteins reveal biological sex and genetic variability in southern African Paranthropus (2025, Science)
- PepGo: a deep learning and tree search-based model for de novo peptide sequencing (2025, bioRxiv)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2024, Peer Community Journal)
- Orthrus: an AI-powered, cloud-ready, and open-source hybrid approach for metaproteomics (2024, bioRxiv)
- Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins (2023, bioRxiv)
- MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets (2023, PLOS Computational Biology)
- Spectrum graph-based de-novo sequencing algorithm MaxNovo achieves high peptide identification rates in collisional dissociation MS/MS spectra (2021, bioRxiv)
- ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping (2020, Molecular & Cellular Proteomics)
- The dental proteome of Homo antecessor (2020, Nature)
- Enamel proteome shows that Gigantopithecus was an early diverging pongine (2019, Nature)
- Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny (2019, Nature)
- MetaNovo: a probabilistic approach to peptide discovery in complex metaproteomic datasets (2019, bioRxiv)
- Sweet google O’ mine—The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces (2019, EuPA Open Proteomics)
- Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search (2019, EuPA Open Proteomics)
- Protein sequences bound to mineral surfaces persist into deep time (2016, eLife)
- A Proteomic Workflow Using High-Throughput De Novo Sequencing Towards Complementation of Genome Information for Improved Comparative Crop Science (2016, Methods in Molecular Biology)
- How much peptide sequence information is contained in ion trap tandem mass spectra? (2008, Journal of the American Society for Mass Spectrometry)
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
- De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis (2004, Journal of Mass Spectrometry)
- “De Novo” Sequencing of Peptides Recovered from In-Gel Digested Proteins by Nanoelectrospray Tandem Mass Spectrometry (2003, Molecular Biotechnology)
- De Novo Peptide Sequencing by Nanoelectrospray Tandem Mass Spectrometry Using Triple Quadrupole and Quadrupole/Time-of-Flight Instruments (2003, Mass Spectrometry of Proteins and Peptides)
- Rapid de novo peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer (1997, Rapid Communications in Mass Spectrometry)
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994, Analytical Chemistry)