SequenceAssembler: A tool for protein sequence assembly from mass spectrometry data

peer-reviewed · Journal of Proteomics · 2025

peer-reviewed · Journal of Proteomics · 2025. Celso Vitor A. Q. Calomeno et al.
Date 2025-10-08
Type peer-reviewed
Venue Journal of Proteomics
Publisher Elsevier
Contribution post-processor
DOI 10.1016/j.jprot.2025.105542
Citations (OpenAlex) 0
Venue 2-year citedness 2.56

Authors

  1. Celso Vitor A. Q. Calomeno · Carlos Chagas Institute, Fiocruz Paraná
  2. Hulyana Brum · Carlos Chagas Institute, Fiocruz Paraná
  3. Rodrigo S. C. Brant · Carlos Chagas Institute, Fiocruz Paraná
  4. Marlon D. M. Santos · Carlos Chagas Institute, Fiocruz Paraná, Institut Pasteur de Montevideo
  5. Luis Miguel Muñoz-Gómez · Oswaldo Cruz Institute, Fiocruz
  6. Ana Gisele da Costa Neves-Ferreira · Oswaldo Cruz Institute, Fiocruz
  7. Richard Hemmi Valente · Oswaldo Cruz Institute, Fiocruz
  8. Michel Batista · Carlos Chagas Institute, Fiocruz Paraná
  9. Paulo C. Carvalho · Carlos Chagas Institute, Fiocruz Paraná, University of California San Diego

Methods and tools

  • Novor: Real-time decision-tree scoring
  • PEAKS: Commercial DP-based de novo
  • SequenceAssembler: Post-identification tool that assembles full-length protein sequences by unifying peptide-spectrum matching (PSM) and de novo sequencing outputs from Novor Cloud, PEAKS Studio, and PatternLab for Proteomics; one-click GUI and comparable in performance to Stitch.

Cites (3)

Seen in the charts

Back to the full map

Back to top