Novor
algorithm · Decision tree
Novor: algorithm · Decision tree. Real-time decision-tree scoring
Real-time decision-tree scoring
| Kind | algorithm |
| Deep learning | no |
| Acquisition | DDA |
| Family | Decision tree |
Benchmarks
- denovo_benchmarks: median peptide-level average precision 0.825 over 86 datasets, median rank 3 of 14 (version v5.1.5-b302).
Both are mass-based matches on the tool’s most recent run. What these numbers mean.
Papers describing it (2)
- Novor: Real-Time Peptide de Novo Sequencing Software (2015, Journal of the American Society for Mass Spectrometry, peer-reviewed)
- Adjacent Y-Ion Ratio Distributions and Its Application in Peptide Sequencing (2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics, peer-reviewed)
Papers using it (12)
Applications and evaluations that ran this method. They are not counted among its authors below.
- SequenceAssembler: A tool for protein sequence assembly from mass spectrometry data (2025, Journal of Proteomics, peer-reviewed)
- Identification of broadly inhibitory anti-PfEMP1 antibodies by mass spectrometry sequencing of plasma IgG from a malaria-exposed child (2025, Proceedings of the National Academy of Sciences, peer-reviewed)
- Venomics and antivenomics of Indian spectacled cobra (Naja naja) from the Western Ghats (2022, Acta Tropica, peer-reviewed)
- DDASSQ: An open‐source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform (2021, PROTEOMICS, peer-reviewed)
- Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra (2020, Patterns, peer-reviewed)
- Parallel factor analysis enables quantification and identification of highly-convolved data independent-acquired protein spectra (2020, bioRxiv, preprint)
- Delineating the venom toxin arsenal of Malabar pit viper (Trimeresurus malabaricus) from the Western Ghats of India and evaluating its immunological cross-reactivity and in vitro cytotoxicity (2020, International Journal of Biological Macromolecules, peer-reviewed)
- Algorithm of Protein Sequence Determination by Combination of the Edman Degradation Method and Shotgun Mass Spectrometry (2018, Biomedical Chemistry: Research and Methods, peer-reviewed)
- Mass spectrometry-assisted venom profiling of Hypnale hypnale found in the Western Ghats of India incorporating de novo sequencing approaches (2018, International Journal of Biological Macromolecules, peer-reviewed)
- The sequence coverage in different methods of mass spectrometry data analysis obtained on model proteins (2017, Biomeditsinskaya Khimiya, peer-reviewed)
- Discovery of New Features for Peptide Sequencing with Mass Spectrometry (2017, thesis)
- Tagger: Enhance Database Search Tools with De Novo Sequencing Tags (2017, thesis)