PEAKS
algorithm · Graph / DP
PEAKS: algorithm · Graph / DP. Commercial DP-based de novo
Commercial DP-based de novo
| Kind | algorithm |
| Family | Graph / DP |
| Deep learning | no |
| Acquisition | DDA |
Papers
- Sequence-resolved discovery and cellular validation of immunomodulatory peptides from cricket protein hydrolysate (2026, Future Foods, peer-reviewed)
- Sequence-Resolved Discovery of Immunomodulatory Peptides from Cricket Protein Hydrolysate as a Functional Alternative Protein Ingredient (2026, SSRN Electronic Journal, preprint)
- SequenceAssembler: A tool for protein sequence assembly from mass spectrometry data (2025, Journal of Proteomics, peer-reviewed)
- Expanding the repertoire of conopeptides from the venom of the vermivorous snail Conus regius (2025, Toxicon, peer-reviewed)
- De novo sequencing of multiple tandem mass spectra of peptide containing SILAC labeling (2023, thesis)
- Identification of Daboia siamensis venome using integrated multi-omics data (2022, Scientific Reports, peer-reviewed)
- Venomics and antivenomics of Indian spectacled cobra (Naja naja) from the Western Ghats (2022, Acta Tropica, peer-reviewed)
- Rubisco activase requires residues in the large subunit N terminus to remodel inhibited plant Rubisco (2020, Journal of Biological Chemistry, peer-reviewed)
- Delineating the venom toxin arsenal of Malabar pit viper (Trimeresurus malabaricus) from the Western Ghats of India and evaluating its immunological cross-reactivity and in vitro cytotoxicity (2020, International Journal of Biological Macromolecules, peer-reviewed)
- Mass spectrometry-assisted venom profiling of Hypnale hypnale found in the Western Ghats of India incorporating de novo sequencing approaches (2018, International Journal of Biological Macromolecules, peer-reviewed)
- Identification of <10 KD peptides in the water extraction of Venenum Bufonis from Bufo gargarizans using Nano LC-MS/MS and De novo sequencing (2018, Journal of Pharmaceutical and Biomedical Analysis, peer-reviewed)
- Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic “de novo” sequencing using CID/HCD/ETD MS/MS analyses (2015, Journal of Proteomics, peer-reviewed)
- Immune Responses Are Characterized by Specific Shared Immunoglobulin Peptides That Can Be Detected by Proteomic Techniques (2010, Journal of Biological Chemistry, peer-reviewed)
- An effective algorithm for peptide de novo sequencing from MS/MS spectra (2005, Journal of Computer and System Sciences, peer-reviewed)
- PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003, Rapid Communications in Mass Spectrometry, peer-reviewed)